Malta: Blue Lagoon, Comino, Gozo & Crystal Lagoon Sea Caves

Key Points

• Duration: 4 hours, with multiple departure times from Gozo and Malta
• Highlights: Swim stops at Blue Lagoon and Crystal Lagoon, plus a speedboat cave trip (extra cost)
• Onboard amenities: Water slide (on select trips), deck chairs, freshwater shower, toilets, and a full cash bar
• Stops include: Santa Maria Battery, Elephant Rock, Santa Maria Caves, St. Marija Bay, Mgarr Harbour
• Best suited for: Travelers seeking scenic views, swimming, and a relaxed boat experience with friendly staff

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Malta’s Blue Lagoon and Crystal Lagoon: An Overview

This 4-hour boat tour explores some of Malta’s most celebrated spots around the islands of Comino and Gozo. Starting at Marfa Jetty in Malta or Mgarr Harbour in Gozo, the trip takes you through crystal-clear waters, past notable landmarks such as Santa Maria Battery, Elephant Rock, and the St. Maria Caves.
The tour includes swim stops at the Blue Lagoon and Crystal Lagoon, allowing ample time for snorkeling and relaxing in turquoise waters. The Blue Lagoon stop lasts 1 hour and 30 minutes, offering plenty of opportunity to swim, take photos, or simply soak up the sun.

Notably, the Crystal Lagoon stop lasts for about 1 hour, where you can enjoy swimming, snorkeling, or sliding down the onboard water slide—a favorite feature on most trips. The tour also offers an optional speedboat cave trip for an extra €10, which is perfect for exploring nearby sea caves more closely.

While the tour is known for its scenic beauty and relaxing stops, it does not include land visits unless pre-booked for Comino Island, and the water slide is only available on specific departure times (9am and 1pm). The trip is suitable for those who enjoy boat rides, swimming, and spending time in stunning natural spots, but it may be less comfortable for travelers prone to seasickness or those who dislike rocky climbs at the stops.

From Mgarr Harbour to Comino’s Famous Blue Lagoon

The adventure begins at Mgarr Harbour in Gozo or Marfa Jetty in Malta, with departure times varying seasonally. The trip from Mgarr Harbour to Comino’s Blue Lagoon takes about 25 minutes, during which passengers can enjoy the views of the Malta coastline, including the Fort Chambray area.

Upon arrival at Blue Lagoon, guests are anchored for 1 hour and 30 minutes. This spot is famous for its bright turquoise waters and soft sandy shores, making it ideal for swimming, snorkeling, or simply relaxing on deck. The shallow, clear waters attract many fish, providing fun opportunities for underwater exploration.

The guide leads you through the scenic surroundings, with passing sights such as St. Nicholas Bay and the St. Marija Caves. Many travelers appreciate the ample time at Blue Lagoon, which allows for a leisurely swim and taking memorable photos. The boat’s onboard amenities—including deck chairs and a water slide (on select trips)—add comfort and fun to the experience.

Exploring the Crystal Lagoon and Its Sparkling Waters

The next stop is the Crystal Lagoon, a smaller but equally captivating spot. Here, visitors have 1 hour to dive into the sparkling waters, snorkel around the dramatic cliffs, or relax by the shoreline. The area is known for its dramatic cliffs and vibrant marine life, making it a favorite for underwater activities.

Guests can choose to snorkel with provided gear (a small deposit of €20 is required for the snorkel equipment) or enjoy the views from the deck. The lagoon’s scenic setting offers perfect photo opportunities, with towering cliffs and clear waters creating a picturesque backdrop.

For added excitement, the onboard water slide—available on certain trips—provides a quick thrill for those wanting a splash of adrenaline. The time at Crystal Lagoon balances relaxation and activity, making it a highlight of the tour.

Scenic Passage Past Santa Maria Bay, Elephant Rock, and Mgarr Harbour

Throughout the cruise, the guide points out several landmarks along the way, including Santa Maria Bay, which offers a scenic drive-by view. Passengers enjoy watching these areas from the boat’s spacious decks, gaining a sense of the island’s coastal landscape.

The route also takes you past Elephant Rock, a natural rock formation resembling an elephant’s head, and the Santa Maria Caves. These caves are a popular photo stop, with a brief 5-minute visit allowing for photos and a quick exploration. Guests can also opt for an additional speedboat trip to visit the caves more closely, at an extra €10.

The scenic cruise between stops provides a relaxed pace, with plenty of opportunities for sightseeing and enjoying the sea breeze. The onboard crew ensures safety and comfort, making this part of the journey engaging and comfortable.

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Discovering Mgarr Harbour and the Surrounding Coastline

As the boat leaves Comino, it sails towards Mgarr Harbour, where you get a chance for a quick photo stop and a brief look at the harbor area. This scenic visit highlights the lively Gozitan port, with views of boats, fishing vessels, and the coastal scenery.

From Mgarr Harbour, the boat continues to pass by St. Marija Bay and other landmarks, offering a relaxing ride back towards the starting point in Marfa Jetty or Mgarr Harbour. The return journey is typically about 15-25 minutes, during which passengers can unwind and enjoy the sea views.

Many reviews note that the timing of stops is well-paced, allowing enough time at each location without feeling rushed. The onboard atmosphere remains lively and friendly, with the crew often serving drinks from the cash bar and encouraging relaxation.

Onboard Comfort and Entertainment

This boat tour emphasizes comfort and fun onboard. The vessel features spacious decks with tables for casual seating, a rooftop area with comfortable deck chairs for sunbathing, and clean toilets for convenience.

The full cash bar offers a variety of drinks—water, wine, and other beverages—allowing guests to stay refreshed throughout the trip. The water slide is only available on trips departing at 9am and 1pm, adding an extra element of excitement, especially for families and younger travelers.

The boat is described as comfortable and spacious, and reviews frequently mention the friendly crew and the quality of the facilities. The scenic views and relaxed pace make this tour ideal for those wanting a mix of sightseeing, swimming, and casual socializing.

Practicalities: Meeting Points, Timing, and Preparation

The tour begins at Marfa Jetty in Malta or Mgarr Harbour in Gozo. The meeting point is clearly indicated: at the Head of the Key for the Malta departure, while Gozo travelers should arrive at least one hour earlier.
It’s advisable to arrive 15 minutes early for check-in, with tickets having a QR code that needs to be ready. The guide speaks English, and the tour operates seasonally with multiple departures—two trips daily in summer and one in winter.

Weather conditions can impact the schedule; the captain reserves the right to change stop durations or cancel trips if necessary for safety. Passengers are advised to bring change of clothes, camera, beachwear, and cash for optional extras.

Towels are not included, and pets are not allowed unless they are assistance animals. The tour does not include food but provides snacks for purchase onboard.

The Overall Value of This Maltese Sea Adventure

This tour offers a balanced mix of scenic cruising, swimming, and exploration within a 4-hour window, making it suitable for travelers seeking a relaxed yet engaging experience. The price point includes multiple swim stops, onboard amenities, and professional crew services.

Many reviews highlight the friendly staff, ample time at key stops, and the quality of the boat facilities. The water slide and snorkel equipment add extra fun, especially on trips with specific departure times. The optional cave trip provides an additional adventure at a small extra cost.

While the boat can be rough on windy days, and the rocky terrain at some stops might be challenging for some, the overall experience remains highly rated for its beautiful scenery and value. It’s especially suited for those who want splashing, sightseeing, and unhurried time in stunning locations.

Frequently Asked Questions

What is included in the tour price?
The price covers the boat cruise, experienced captain, deckhand, scenic stops, swimming and snorkeling stops, water slide (on select trips), deck chairs, toilets, freshwater shower, life jackets, and scenic views of Mgarr Harbour.

Are drinks and food available onboard?
Yes, there is a full cash bar with drinks available for purchase, including water and wine. Snacks can also be bought onboard, but food is not included in the tour price.

Can I go on land at Comino?
Yes, but only if you pre-book your tickets online for the Comino island walk. Walk-on tickets for the island are not included and must be purchased separately.

What are the departure times?
In summer (April-October), departures are at 08:30/12:30 from Gozo and 09:00/13:00 from Malta. In winter (November-March), there is a single trip at 10:15 am from Gozo and 11:00 am from Malta.

Is this tour suitable for children or families?
Yes, especially for those who enjoy swimming, relaxing aboard a boat, and scenic stops. The onboard water slide adds extra fun for kids and adventurous adults on specific trips.

What should I bring?
Guests should bring change of clothes, camera, beachwear, and cash for extras. Towels are not provided, so bringing your own is recommended.

Is there an option to visit Gozo on this tour?
No, land visits to Gozo are not included unless pre-booked separately. The focus is on Comino’s Blue and Crystal Lagoons and scenic cruising.

What happens in case of bad weather?
The captain has the right to change stop durations or cancel trips for safety reasons. Refunds are available if the tour is canceled due to weather.

How long do stops last at each location?
The Blue Lagoon stop is 1 hour and 30 minutes, the Crystal Lagoon stop lasts about 1 hour, with the remaining time spent cruising and sightseeing.

Can I expect seasickness?
The tour involves boat travel, which may be uncomfortable for those prone to seasickness. It’s advisable to take precautions if you are sensitive to motion sickness.

This Malta: Blue Lagoon, Comino, Gozo & Crystal Lagoon Sea Caves tour delivers a beautiful, relaxed day out on the water, with plenty of opportunities for swimming, sightseeing, and enjoying the scenery. Its friendly crew, well-paced itinerary, and comfortable boat facilities make it a popular choice for those wanting to see some of Malta’s most iconic spots without feeling rushed.

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